obitools/obitools3
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obitools3/src
History
mercierc 6ff29c6a6a Increased maximum line count to 10E12
2021-05-31 17:00:55 +12:00
..
libecoPCR
Fixed gcc warnings
2019-09-25 11:38:00 +02:00
libjson
C: Json comments: added an obi_read_comment function to read one value
2019-08-31 18:28:51 +02:00
_sse.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
.gitignore
Add some .ignore files
2019-03-29 15:52:54 +01:00
array_indexer.c
C: fixed remaining memory bug in array indexer
2019-09-01 17:24:57 +02:00
array_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
bloom.c
Commented #ifdef directive for detect_bucket_size function because it
2016-04-27 10:24:40 +02:00
bloom.h
Updated prototypes with no arguments with a void argument as suggested
2018-10-17 12:00:40 +02:00
build_reference_db.c
C: build_reference_db: fixed gcc warning/error
2021-05-31 16:59:17 +12:00
build_reference_db.h
C: build_ref_db: now adds a comment with the threshold used to build the
2019-08-31 18:29:40 +02:00
char_str_indexer.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
char_str_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
CMakeLists.txt
CMake: unset gcc for nix
2019-09-26 21:04:42 +02:00
crc64.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
crc64.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
dna_seq_indexer.c
minor fixes and comments
2018-11-19 11:23:54 +01:00
dna_seq_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
encode.c
Now handling sequences with Uracil (U) nucleotides by converting to
2020-10-30 10:46:17 +01:00
encode.h
Now handling sequences with Uracil (U) nucleotides by converting to
2020-10-30 10:46:17 +01:00
hashtable.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
hashtable.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
kmer_similarity.c
alignpairedend: fixed bug that would cut out sequence ends when it
2021-04-07 10:31:12 +12:00
kmer_similarity.h
alignpairedend: improved/fixed the output tags for the alignment score
2020-07-13 15:59:50 +02:00
linked_list.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
linked_list.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
murmurhash2.c
Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem
2016-04-26 14:29:17 +02:00
murmurhash2.h
Little annotations for the murmur hash function.
2016-04-21 13:53:29 +02:00
obi_clean.c
Made the OBITools3 more 'empty file friendly'
2021-03-15 16:25:41 +13:00
obi_clean.h
obi clean: fixed a memory bug, fixed the behaviour when no sample info,
2020-07-01 18:17:47 +02:00
obi_ecopcr.c
Now handling dictionaries with one key
2021-03-10 16:50:30 +13:00
obi_ecopcr.h
ecopcr: added warnings and check of primer length (related to #75)
2020-04-05 18:40:56 +02:00
obi_ecotag.c
ecotag: BEST_MATCH_TAXIDS now dereplicated (no repeated taxids in the
2021-05-10 16:02:06 +12:00
obi_ecotag.h
ecotag: added separate threshold for minimum circle identity (and switch
2020-09-25 16:22:09 +02:00
obi_lcs.c
Now handling dictionaries with one key
2021-03-10 16:50:30 +13:00
obi_lcs.h
C obi_lcs: updated deprecated column names and associated comments
2018-12-09 19:17:13 +01:00
obiavl.c
C: now completely unmapping files before truncating them to a smaller
2021-03-11 15:12:40 +13:00
obiavl.h
C: optimized dir opening
2019-08-29 16:35:10 +02:00
obiblob_indexer.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obiblob_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obiblob.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obiblob.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidebug.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidms_taxonomy.c
C: taxonomy: fixed a bug where some taxa would not be stored in the
2021-03-29 09:02:18 +13:00
obidms_taxonomy.h
C: taxonomy: fixed a bug where some taxa would not be stored in the
2021-03-29 09:02:18 +13:00
obidms.c
C: now completely unmapping files before truncating them to a smaller
2021-03-11 15:12:40 +13:00
obidms.h
C: Made maximum file path length 2048 instead of 1024
2021-03-11 15:23:22 +13:00
obidmscolumn_array.c
Fixed a bug in the array indexer where the value's length was no
2018-11-27 16:18:34 +01:00
obidmscolumn_array.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_blob.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_blob.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_bool.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_bool.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_char.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_char.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_float.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_float.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_idx.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_idx.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_int.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_int.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_qual.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_qual.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_seq.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_seq.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_str.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn_str.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obidmscolumn.c
C: now completely unmapping files before truncating them to a smaller
2021-03-11 15:12:40 +13:00
obidmscolumn.h
Increased maximum line count to 10E12
2021-05-31 17:00:55 +12:00
obidmscolumndir.c
C: fixed a bug when opening or creating a new column directory where the
2019-09-04 13:16:28 +02:00
obidmscolumndir.h
C: made it so column DIR* are not kept open to handle very large DMS
2019-09-04 12:55:21 +02:00
obierrno.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obierrno.h
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
obilittlebigman.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obilittlebigman.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obisig.c
Added signal catching and handling in C and Cython
2019-09-21 16:47:22 +02:00
obisig.h
Adds an extern qualifier to the keep_running declaration.
2021-02-05 15:59:43 +01:00
obitypes.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
obitypes.h
import: Columns are now rewritten in OBI_FLOAT if a value is > INT32_MAX
2021-03-29 09:00:52 +13:00
obiview.c
C: now completely unmapping files before truncating them to a smaller
2021-03-11 15:12:40 +13:00
obiview.h
Now handling dictionaries with one key
2021-03-10 16:50:30 +13:00
sse_banded_LCS_alignment.c
C: SSE lcs alignment: band-aid for memory bug I don't understand
2020-04-17 15:07:52 +02:00
sse_banded_LCS_alignment.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
uint8_indexer.c
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
uint8_indexer.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
upperband.c
updated a comment
2019-07-23 19:03:24 +02:00
upperband.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
utils.c
C: optimized dir opening
2019-08-29 16:35:10 +02:00
utils.h
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00