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Update Wolf tutorial with the OBITools3

Celine Mercier
2020-05-05 11:19:06 +02:00
parent 2c5e82263c
commit 636d4e9ac2
1 changed files with 1 additions and 1 deletions
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Wolf-tutorial-with-the-OBITools3.md

@ -140,7 +140,7 @@ For EMBL files, you can give the path to a directory with several EMBL files.
obi grep --require-rank=family --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq wolf/v05_refs_uniq_clean obi grep --require-rank=family --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq wolf/v05_refs_uniq_clean
4. Build the reference database specifically used by the OBITools3 to make ecotag efficient: 4. Build the reference database specifically used by the OBITools3 to make ecotag efficient by pre-computing the similarities between the reference sequences:
obi build_ref_db -t 0.97 --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq_clean wolf/v05_db_97 obi build_ref_db -t 0.97 --taxonomy wolf/taxonomy/my_tax wolf/v05_refs_uniq_clean wolf/v05_db_97