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Update Wolf tutorial with the OBITools3

Celine Mercier
2023-02-13 05:16:05 +01:00
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Wolf-tutorial-with-the-OBITools3.md

@ -17,6 +17,8 @@ And unzip it:
`--quality-solexa` is the appropriate fastq quality option because it's an old dataset, `wolf_tutorial/wolf_F.fastq` is the path to the file to import, `wolf` is the path to the DMS that will be automatically created, and `reads1` is the name of the view into which the file will be imported. `--quality-solexa` is the appropriate fastq quality option because it's an old dataset, `wolf_tutorial/wolf_F.fastq` is the path to the file to import, `wolf` is the path to the DMS that will be automatically created, and `reads1` is the name of the view into which the file will be imported.
**Note:** If some sequences fail to import, you might need to use the `--input-na-string` option to define the NA string.
2. Import the second set of reads: 2. Import the second set of reads:
obi import --quality-solexa wolf_tutorial/wolf_R.fastq wolf/reads2 obi import --quality-solexa wolf_tutorial/wolf_R.fastq wolf/reads2