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<a href="./">OBITools V4</a>
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<a href="./index.html" class="sidebar-item-text sidebar-link">Preface</a>
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<a href="./intro.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">1</span> <span class="chapter-title">The OBITools</span></a>
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<a href="./tutorial.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">2</span> <span class="chapter-title">OBITools V4 Tutorial</span></a>
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<a href="./commands.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">3</span> <span class="chapter-title">The <em>OBITools V4</em> commands</span></a>
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<a href="./library.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">4</span> <span class="chapter-title">The GO <em>OBITools</em> library</span></a>
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<a href="./annexes.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">5</span> <span class="chapter-title">Annexes</span></a>
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<a href="./references.html" class="sidebar-item-text sidebar-link active">References</a>
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<h1 class="title d-none d-lg-block">References</h1>
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<div id="ref-Boyer2016-gq" class="csl-entry" role="doc-biblioentry">
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Boyer, Frédéric, Céline Mercier, Aurélie Bonin, Yvan Le Bras, Pierre
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Taberlet, and Eric Coissac. 2016. <span>“<span class="nocase">obitools:
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a unix-inspired software package for DNA metabarcoding</span>.”</span>
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<em>Molecular Ecology Resources</em> 16 (1): 176–82. <a href="https://doi.org/10.1111/1755-0998.12428">https://doi.org/10.1111/1755-0998.12428</a>.
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</div>
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Cock, Peter JA, Christopher J Fields, Naohisa Goto, Michael L Heuer, and
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Peter M Rice. 2010. <span>“The Sanger FASTQ File Format for Sequences
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with Quality Scores, and the Solexa/Illumina FASTQ Variants.”</span>
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<em>Nucleic Acids Research</em> 38 (6): 1767–71.
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</div>
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<div id="ref-Lipman1985-hw" class="csl-entry" role="doc-biblioentry">
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Lipman, D J, and W R Pearson. 1985. <span>“<span class="nocase">Rapid
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and sensitive protein similarity searches</span>.”</span>
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<em>Science</em> 227 (4693): 1435–41. <a href="http://www.ncbi.nlm.nih.gov/pubmed/2983426">http://www.ncbi.nlm.nih.gov/pubmed/2983426</a>.
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</div>
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<div id="ref-Riaz2011-gn" class="csl-entry" role="doc-biblioentry">
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Riaz, Tiayyba, Wasim Shehzad, Alain Viari, François Pompanon, Pierre
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Taberlet, and Eric Coissac. 2011. <span>“<span class="nocase">ecoPrimers: inference of new DNA barcode markers from
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whole genome sequence analysis</span>.”</span> <em>Nucleic Acids
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Research</em> 39 (21): e145. <a href="https://doi.org/10.1093/nar/gkr732">https://doi.org/10.1093/nar/gkr732</a>.
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</div>
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<div id="ref-Seguritan2001-tg" class="csl-entry" role="doc-biblioentry">
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Seguritan, V, and F Rohwer. 2001. <span>“<span class="nocase">FastGroup:
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a program to dereplicate libraries of 16S rDNA sequences</span>.”</span>
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<em>BMC Bioinformatics</em> 2 (October): 9. <a href="https://doi.org/10.1186/1471-2105-2-9">https://doi.org/10.1186/1471-2105-2-9</a>.
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</div>
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<div id="ref-Shehzad2012-pn" class="csl-entry" role="doc-biblioentry">
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Shehzad, Wasim, Tiayyba Riaz, Muhammad A Nawaz, Christian Miquel, Carole
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Poillot, Safdar A Shah, Francois Pompanon, Eric Coissac, and Pierre
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Taberlet. 2012. <span>“<span class="nocase">Carnivore diet analysis
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based on next-generation sequencing: Application to the leopard cat
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(Prionailurus bengalensis) in Pakistan</span>.”</span> <em>Molecular
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Ecology</em> 21 (8): 1951–65. <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x">https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x</a>.
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</div>
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try { href = new URL(href).hash; } catch {}
|
|||
|
|
const id = href.replace(/^#\/?/, "");
|
|||
|
|
const note = window.document.getElementById(id);
|
|||
|
|
return note.innerHTML;
|
|||
|
|
});
|
|||
|
|
}
|
|||
|
|
const findCites = (el) => {
|
|||
|
|
const parentEl = el.parentElement;
|
|||
|
|
if (parentEl) {
|
|||
|
|
const cites = parentEl.dataset.cites;
|
|||
|
|
if (cites) {
|
|||
|
|
return {
|
|||
|
|
el,
|
|||
|
|
cites: cites.split(' ')
|
|||
|
|
};
|
|||
|
|
} else {
|
|||
|
|
return findCites(el.parentElement)
|
|||
|
|
}
|
|||
|
|
} else {
|
|||
|
|
return undefined;
|
|||
|
|
}
|
|||
|
|
};
|
|||
|
|
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
|
|||
|
|
for (var i=0; i<bibliorefs.length; i++) {
|
|||
|
|
const ref = bibliorefs[i];
|
|||
|
|
const citeInfo = findCites(ref);
|
|||
|
|
if (citeInfo) {
|
|||
|
|
tippyHover(citeInfo.el, function() {
|
|||
|
|
var popup = window.document.createElement('div');
|
|||
|
|
citeInfo.cites.forEach(function(cite) {
|
|||
|
|
var citeDiv = window.document.createElement('div');
|
|||
|
|
citeDiv.classList.add('hanging-indent');
|
|||
|
|
citeDiv.classList.add('csl-entry');
|
|||
|
|
var biblioDiv = window.document.getElementById('ref-' + cite);
|
|||
|
|
if (biblioDiv) {
|
|||
|
|
citeDiv.innerHTML = biblioDiv.innerHTML;
|
|||
|
|
}
|
|||
|
|
popup.appendChild(citeDiv);
|
|||
|
|
});
|
|||
|
|
return popup.innerHTML;
|
|||
|
|
});
|
|||
|
|
}
|
|||
|
|
}
|
|||
|
|
});
|
|||
|
|
</script>
|
|||
|
|
<nav class="page-navigation">
|
|||
|
|
<div class="nav-page nav-page-previous">
|
|||
|
|
<a href="./annexes.html" class="pagination-link">
|
|||
|
|
<i class="bi bi-arrow-left-short"></i> <span class="nav-page-text"><span class="chapter-number">5</span> <span class="chapter-title">Annexes</span></span>
|
|||
|
|
</a>
|
|||
|
|
</div>
|
|||
|
|
<div class="nav-page nav-page-next">
|
|||
|
|
</div>
|
|||
|
|
</nav>
|
|||
|
|
</div> <!-- /content -->
|
|||
|
|
|
|||
|
|
|
|||
|
|
|
|||
|
|
</body></html>
|