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obitools4/install_obitools.sh

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#!/bin/bash
URL="https://go.dev/dl/"
OBIURL4="https://git.metabarcoding.org/lecasofts/go/obitools/-/archive/master/obitools-master.tar.gz"
# the directory of the script
DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
# the temp directory used, within $DIR
# omit the -p parameter to create a temporal directory in the default location
WORK_DIR=$(mktemp -d -t "$DIR" "obitools4.XXXXXX")
# check if tmp dir was created
if [[ ! "$WORK_DIR" || ! -d "$WORK_DIR" ]]; then
echo "Could not create temp dir"
exit 1
fi
pushd $WORK_DIR
OS=$(uname -a | awk '{print $1}')
ARCH=$(uname -m)
if [[ "$ARCH" == "x86_64" ]] ; then
ARCH="amd64"
fi
GOFILE=$(curl "$URL" \
| grep 'class="download"' \
| grep "\.tar\.gz" \
| sed -E 's@^.*/dl/(go[1-9].+\.tar\.gz)".*$@\1@' \
| grep -i "$OS" \
| grep -i "$ARCH" \
| head -1)
GOURL=$(curl "${URL}${GOFILE}" \
| sed -E 's@^.*href="(.*\.tar\.gz)".*$@\1@')
curl "$GOURL" \
| tar zxf -
export PATH="$WORK_DIR/go/bin:$PATH"
curl "$OBIURL4" \
| tar zxf -
cd obitools-master
make
popd