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refactoring of the file chunck writing

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This commit is contained in:
Eric Coissac
2024-11-29 18:15:03 +01:00
parent 69ef1758a2
commit 00b0edc15a
16 changed files with 71 additions and 98 deletions
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4
pkg/obiformats/genbank_read.go
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@ -198,7 +198,7 @@ func GenbankChunkParser(withFeatureTable bool) func(string, io.Reader) (obiseq.B
}
}
func _ParseGenbankFile(input ChannelSeqFileChunk,
func _ParseGenbankFile(input ChannelFileChunk,
out obiiter.IBioSequence,
withFeatureTable bool) {
@ -225,7 +225,7 @@ func ReadGenbank(reader io.Reader, options ...WithOption) (obiiter.IBioSequence,
buff := make([]byte, 1024*1024*128) // 128 MB
entry_channel := ReadSeqFileChunk(
entry_channel := ReadFileChunk(
opt.Source(),
reader,
buff,