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Patch a bug in obitag when some reference sequences have taxid absent from the taxonomy

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Eric Coissac
2025-03-27 16:45:02 +01:00
parent 2d52322876
commit 03b5ce9397
5 changed files with 27 additions and 11 deletions
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8
install_obitools.sh
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@ -68,11 +68,11 @@ if [[ ! -d "${INSTALL_DIR}/bin" ]]; then
exit 1
fi
INSTALL_DIR="$(cd $INSTALL_DIR && pwd)"
INSTALL_DIR="$(cd ${INSTALL_DIR} && pwd)"
echo WORK_DIR=$WORK_DIR 1>&2
echo INSTALL_DIR=$INSTALL_DIR 1>&2
echo OBITOOLS_PREFIX=$OBITOOLS_PREFIX 1>&2
echo "WORK_DIR=$WORK_DIR" 1>&2
echo "INSTALL_DIR=$INSTALL_DIR" 1>&2
echo "OBITOOLS_PREFIX=$OBITOOLS_PREFIX" 1>&2
pushd "$WORK_DIR"|| exit