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Patch a bug in obitag when some reference sequences have taxid absent from the taxonomy

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Eric Coissac
2025-03-27 16:45:02 +01:00
parent 2d52322876
commit 03b5ce9397
5 changed files with 27 additions and 11 deletions
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2
pkg/obitax/taxon.go
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@ -27,7 +27,7 @@ type Taxon struct {
// Returns:
// - A formatted string representing the Taxon in the form "taxonomy_code:taxon_id [scientific_name]".
func (taxon *Taxon) String() string {
if taxon == nil {
if taxon == nil || taxon.Node == nil {
return "NA"
}
return taxon.Node.String(taxon.Taxonomy.code)