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Fisrt functional version

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This commit is contained in:
Eric Coissac
2024-11-14 19:10:23 +01:00
parent 9471fedfa1
commit 03f4e88a17
26 changed files with 908 additions and 307 deletions
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8
pkg/obiformats/csv_writer.go
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@ -30,14 +30,10 @@ func CSVRecord(sequence *obiseq.BioSequence, opt Options) []string {
if opt.CSVTaxon() {
taxid := sequence.Taxid()
sn, ok := sequence.GetAttribute("scientific_name")
sn, ok := sequence.GetStringAttribute("scientific_name")
if !ok {
if taxid == 1 {
sn = "root"
} else {
sn = opt.CSVNAValue()
}
sn = opt.CSVNAValue()
}
record = append(record, fmt.Sprint(taxid), fmt.Sprint(sn))