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Add option related to agrep match on obigrep and obiannotate

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This commit is contained in:
Eric Coissac
2024-09-09 16:52:13 +02:00
parent 65ae82622e
commit 05bf2bfd6c
12 changed files with 167 additions and 34 deletions
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4
pkg/obitools/obiconvert/sequence_reader.go
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@ -138,6 +138,10 @@ func CLIReadBioSequences(filenames ...string) (obiiter.IBioSequence, error) {
}
switch CLIInputFormat() {
case "fastq":
reader = obiformats.ReadFastqFromFile
case "fasta":
reader = obiformats.ReadFastaFromFile
case "ecopcr":
reader = obiformats.ReadEcoPCRFromFile
case "embl":