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change the model for representing paired reads and extend its usage to other commands

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This commit is contained in:
Eric Coissac
2023-02-23 23:35:58 +01:00
parent ebb05fcdf7
commit 072b85e155
23 changed files with 598 additions and 338 deletions
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5
pkg/obiiter/pipe.go
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@ -40,5 +40,10 @@ func (input IBioSequence) CopyTee() (IBioSequence, IBioSequence) {
}
}()
if input.IsPaired() {
first.MarkAsPaired()
second.MarkAsPaired()
}
return first, second
}