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Adds Aho-Corasick matching to obiannotate

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This commit is contained in:
Eric Coissac
2023-02-09 15:59:11 +01:00
parent 8b70b1a5d8
commit 08521c74e2
6 changed files with 94 additions and 2 deletions
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2
cmd/obitools/obiannotate/main.go
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@ -36,7 +36,7 @@ func main() {
sequences, _ := obiconvert.ReadBioSequences(args...)
annotator := obiannotate.CLIAnnotationPipeline()
obiconvert.WriteBioSequences(sequences.Pipe(annotator), true)
obiconvert.WriteBioSequences(sequences.Pipe(annotator).Speed(), true)
obiiter.WaitForLastPipe()