obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

Adds possibility to extract a taxonomy from taxonomic path included in sequence files

Browse Source
This commit is contained in:
Eric Coissac
2025-01-30 11:18:21 +01:00
parent 2452aef7a9
commit 0df082da06
20 changed files with 460 additions and 173 deletions
Download Patch File Download Diff File Expand all files Collapse all files

121
pkg/obiutils/goutils.go
View File

@ -25,43 +25,6 @@ func (m *NotAnInteger) Error() string {
return m.message
}
// InterfaceToInt converts a interface{} to an integer value if possible.
// If not a "NotAnInteger" error is returned via the err
// return value and val is set to 0.
func InterfaceToInt(i interface{}) (val int, err error) {
err = nil
val = 0
switch t := i.(type) {
case int:
val = t
case int8:
val = int(t) // standardizes across systems
case int16:
val = int(t) // standardizes across systems
case int32:
val = int(t) // standardizes across systems
case int64:
val = int(t) // standardizes across systems
case float32:
val = int(t) // standardizes across systems
case float64:
val = int(t) // standardizes across systems
case uint8:
val = int(t) // standardizes across systems
case uint16:
val = int(t) // standardizes across systems
case uint32:
val = int(t) // standardizes across systems
case uint64:
val = int(t) // standardizes across systems
default:
err = &NotAnInteger{"value attribute cannot be casted to an integer"}
}
return
}
// NotAnInteger defines a new type of Error : "NotAnInteger"
type NotAnFloat64 struct {
message string
@ -74,43 +37,6 @@ func (m *NotAnFloat64) Error() string {
return m.message
}
// InterfaceToInt converts a interface{} to an integer value if possible.
// If not a "NotAnInteger" error is returned via the err
// return value and val is set to 0.
func InterfaceToFloat64(i interface{}) (val float64, err error) {
err = nil
val = 0
switch t := i.(type) {
case int:
val = float64(t)
case int8:
val = float64(t) // standardizes across systems
case int16:
val = float64(t) // standardizes across systems
case int32:
val = float64(t) // standardizes across systems
case int64:
val = float64(t) // standardizes across systems
case float32:
val = float64(t) // standardizes across systems
case float64:
val = t // standardizes across systems
case uint8:
val = float64(t) // standardizes across systems
case uint16:
val = float64(t) // standardizes across systems
case uint32:
val = float64(t) // standardizes across systems
case uint64:
val = float64(t) // standardizes across systems
default:
err = &NotAnFloat64{"value attribute cannot be casted to a float value"}
}
return
}
// NotABoolean defines a new type of Error : "NotAMapInt"
type NotAMapInt struct {
message string
@ -123,53 +49,6 @@ func (m *NotAMapInt) Error() string {
return m.message
}
func InterfaceToIntMap(i interface{}) (val map[string]int, err error) {
err = nil
switch i := i.(type) {
case map[string]int:
val = i
case map[string]interface{}:
val = make(map[string]int, len(i))
for k, v := range i {
val[k], err = InterfaceToInt(v)
if err != nil {
return
}
}
case map[string]float64:
val = make(map[string]int, len(i))
for k, v := range i {
val[k] = int(v)
}
default:
err = &NotAMapInt{"value attribute cannot be casted to a map[string]int"}
}
return
}
func InterfaceToStringMap(i interface{}) (val map[string]string, err error) {
err = nil
switch i := i.(type) {
case map[string]string:
val = i
case map[string]interface{}:
val = make(map[string]string, len(i))
for k, v := range i {
val[k], err = InterfaceToString(v)
if err != nil {
return
}
}
default:
err = &NotAMapInt{"value attribute cannot be casted to a map[string]int"}
}
return
}
// NotABoolean defines a new type of Error : "NotAMapInt"
type NotAMapFloat64 struct {
message string