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Change the API of workers

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Former-commit-id: 9b07306edd8cf28266f86f95823948fa99d39ea9
This commit is contained in:
Eric Coissac
2024-03-02 16:03:46 -04:00
parent 4a0b20484f
commit 0f3871d203
19 changed files with 194 additions and 120 deletions
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4
pkg/obicorazick/worker.go
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@ -14,7 +14,7 @@ func AhoCorazickWorker(slot string, patterns []string) obiseq.SeqWorker {
fslot := slot + "_Fwd"
rslot := slot + "_Rev"
f := func(s *obiseq.BioSequence) *obiseq.BioSequence {
f := func(s *obiseq.BioSequence) (obiseq.BioSequenceSlice, error) {
matchesF := len(matcher.FindAllByteSlice(s.Sequence()))
matchesR := len(matcher.FindAllByteSlice(s.ReverseComplement(false).Sequence()))
@ -26,7 +26,7 @@ func AhoCorazickWorker(slot string, patterns []string) obiseq.SeqWorker {
s.SetAttribute(rslot, matchesR)
}
return s
return obiseq.BioSequenceSlice{s}, nil
}
return f