obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

Change the API of workers

Browse Source 
Former-commit-id: 9b07306edd8cf28266f86f95823948fa99d39ea9
This commit is contained in:
Eric Coissac
2024-03-02 16:03:46 -04:00
parent 4a0b20484f
commit 0f3871d203
19 changed files with 194 additions and 120 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
pkg/obitax/lca.go
View File

@ -147,14 +147,14 @@ func AddLCAWorker(taxonomy *Taxonomy, slot_name string, threshold float64) obise
lca_name = "scientific_name"
}
f := func(sequence *obiseq.BioSequence) *obiseq.BioSequence {
f := func(sequence *obiseq.BioSequence) (obiseq.BioSequenceSlice, error) {
lca, rans, _ := taxonomy.LCA(sequence, threshold)
sequence.SetAttribute(slot_name, lca.Taxid())
sequence.SetAttribute(lca_name, lca.ScientificName())
sequence.SetAttribute(lca_error, math.Round((1-rans)*1000)/1000)
return sequence
return obiseq.BioSequenceSlice{sequence}, nil
}
return f