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Work on EMBL and Genbank parser efficienct

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Former-commit-id: 309cc9ce4eea4c8085d7d4451a66a81710532f07
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Eric Coissac
2024-02-20 13:23:07 +01:00
parent 95caebec8f
commit 1542ce4c63
4 changed files with 69 additions and 14 deletions
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Release-notes.md
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## Latest changes
### Enhancement
- The bug corrected in the parsing of EMBL and Genbank files as implemented in version 4.1.2 of OBITools4,
potentially induced some reduction in the performance of the parsing. This should have been now fixed.
- In the same idea, parsing of genbank and EMBL files were reading and storing in memory not only the sequence
but also the annotations (features table). Up to now none of the obitools are using this information, but
with large complete genomes, it is occupying a lot of memory. To reduce this impact, the new version of the
parser doesn't any more store in memory the annotations by default.
## February 16th, 2024. Release 4.1.2
### Bug fixes