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Same bug but for fastq sequence writing only

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Former-commit-id: 86d208fe66828da9943c559df80ff095b07eaf7a
This commit is contained in:
Eric Coissac
2024-06-26 18:46:47 +02:00
parent e40d0bfbe7
commit 154753de90
3 changed files with 7 additions and 2 deletions
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3
cmd/obitools/obiconvert/main.go
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@ -12,6 +12,9 @@ import (
) )
func main() { func main() {
obioptions.SetStrictReadWorker(2)
obioptions.SetStrictWriteWorker(2)
optionParser := obioptions.GenerateOptionParser(obiconvert.OptionSet) optionParser := obioptions.GenerateOptionParser(obiconvert.OptionSet)
_, args := optionParser(os.Args) _, args := optionParser(os.Args)

4
pkg/obiformats/fastseq_write_fastq.go
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@ -66,7 +66,9 @@ func FormatFastqBatch(batch obiiter.BioSequenceBatch,
_formatFastq(&bs, seq, formater) _formatFastq(&bs, seq, formater)
if first { if first {
bs.Grow(lt + (len(bs.Bytes())-seq.Len())*batch.Len()*5/4) growing := lt + (len(bs.Bytes())-2*seq.Len())*batch.Len()*5/4
log.Debugf("Grow Fastq block of %d", growing)
bs.Grow(growing)
first = false first = false
} }

2
pkg/obioptions/version.go
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@ -7,7 +7,7 @@ import (
// TODO: The version number is extracted from git. This induces that the version // TODO: The version number is extracted from git. This induces that the version
// corresponds to the last commit, and not the one when the file will be // corresponds to the last commit, and not the one when the file will be
// commited // commited
var _Commit = "5073957" var _Commit = "d208ff8"
var _Version = "Release 4.2.0" var _Version = "Release 4.2.0"
// Version returns the version of the obitools package. // Version returns the version of the obitools package.