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Add some code refactoring from the blackboard branch

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This commit is contained in:
Eric Coissac
2024-08-02 12:35:46 +02:00
parent bc1aaaf7d9
commit 1b1cd41fd3
38 changed files with 491 additions and 330 deletions
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6
pkg/obichunk/subchunks.go
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@ -90,7 +90,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequence,
for iterator.Next() {
batch := iterator.Get()
source := batch.Source()
if batch.Len() > 1 {
classifier.Reset()
@ -117,7 +117,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequence,
ss := obiseq.MakeBioSequenceSlice()
for i, v := range ordered {
if v.code != last {
newIter.Push(obiiter.MakeBioSequenceBatch(nextOrder(), ss))
newIter.Push(obiiter.MakeBioSequenceBatch(source, nextOrder(), ss))
ss = obiseq.MakeBioSequenceSlice()
last = v.code
}
@ -127,7 +127,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequence,
}
if len(ss) > 0 {
newIter.Push(obiiter.MakeBioSequenceBatch(nextOrder(), ss))
newIter.Push(obiiter.MakeBioSequenceBatch(source, nextOrder(), ss))
}
} else {
newIter.Push(batch.Reorder(nextOrder()))