obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

Add some code refactoring from the blackboard branch

Browse Source
This commit is contained in:
Eric Coissac
2024-08-02 12:35:46 +02:00
parent bc1aaaf7d9
commit 1b1cd41fd3
38 changed files with 491 additions and 330 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
pkg/obiiter/fragment.go
View File

@ -20,9 +20,11 @@ func IFragments(minsize, length, overlap, size, nworkers int) Pipeable {
}()
f := func(iterator IBioSequence, id int) {
source := ""
for iterator.Next() {
news := obiseq.MakeBioSequenceSlice()
sl := iterator.Get()
source = sl.Source()
for _, s := range sl.Slice() {
if s.Len() <= minsize {
@ -52,7 +54,7 @@ func IFragments(minsize, length, overlap, size, nworkers int) Pipeable {
s.Recycle()
}
} // End of the slice loop
newiter.Push(MakeBioSequenceBatch(sl.Order(), news))
newiter.Push(MakeBioSequenceBatch(source, sl.Order(), news))
sl.Recycle(false)
} // End of the iterator loop