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Force sequence reading to produce lowercase sequences.

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Adds two columns to the obiclean ratio csv file
This commit is contained in:
Eric Coissac
2022-11-22 15:06:09 +01:00
parent f4daa7f97f
commit 20b16c0ba1
14 changed files with 294 additions and 23 deletions
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2
pkg/obiformats/embl_read.go
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@ -128,7 +128,7 @@ func _ParseEmblFile(input <-chan _FileChunk, out obiiter.IBioSequenceBatch) {
}
case line == "//":
sequence := obiseq.NewBioSequence(id,
seqBytes.Bytes(),
bytes.ToLower(seqBytes.Bytes()),
defBytes.String())
sequence.SetFeatures(featBytes.Bytes())