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Force sequence reading to produce lowercase sequences.

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Adds two columns to the obiclean ratio csv file
This commit is contained in:
Eric Coissac
2022-11-22 15:06:09 +01:00
parent f4daa7f97f
commit 20b16c0ba1
14 changed files with 294 additions and 23 deletions
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3
pkg/obiformats/fastseq_read.go
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@ -7,6 +7,7 @@ package obiformats
import "C"
import (
"bytes"
"fmt"
"os"
"unsafe"
@ -38,7 +39,7 @@ func _FastseqReader(seqfile C.fast_kseq_p,
comment = ""
}
rep := obiseq.NewBioSequence(name, sequence, comment)
rep := obiseq.NewBioSequence(name, bytes.ToLower(sequence), comment)
if s.qual.l > C.ulong(0) {
cquality := unsafe.Slice(s.qual.s, C.int(s.qual.l))