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remove the slice pool management

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This commit is contained in:
Eric Coissac
2024-09-24 16:31:30 +02:00
parent 2b4a633c30
commit 241f2286f2
17 changed files with 23 additions and 84 deletions
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8
pkg/obiiter/batchiterator.go
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@ -459,7 +459,6 @@ func (iterator IBioSequence) Rebatch(size int) IBioSequence {
}
i += to_push
}
seqs.Recycle(false)
}
log.Debug("End of the rebatch loop")
if len(buffer) > 0 {
@ -521,7 +520,6 @@ func (iterator IBioSequence) Recycle() {
o := batch.Order()
log.Debugln("Recycling batch #", o)
recycled += batch.Len()
batch.Recycle(true)
log.Debugln("Batch #", o, " recycled")
}
log.Debugf("End of the recycling of %d Bioseq objects", recycled)
@ -529,8 +527,7 @@ func (iterator IBioSequence) Recycle() {
func (iterator IBioSequence) Consume() {
for iterator.Next() {
batch := iterator.Get()
batch.Recycle(false)
iterator.Get()
}
}
@ -548,7 +545,6 @@ func (iterator IBioSequence) Count(recycle bool) (int, int, int) {
reads += seq.Count()
nucleotides += seq.Len()
}
batch.Recycle(recycle)
}
log.Debugf("End of the counting of %d Bioseq objects", variants)
return variants, reads, nucleotides
@ -602,7 +598,6 @@ func (iterator IBioSequence) DivideOn(predicate obiseq.SequencePredicate,
falseSlice = obiseq.MakeBioSequenceSlice()
}
}
seqs.Recycle(false)
}
if len(trueSlice) > 0 {
@ -749,7 +744,6 @@ func (iterator IBioSequence) Load() (string, obiseq.BioSequenceSlice) {
}
log.Debugf("append %d sequences", b.Len())
chunk = append(chunk, b.Slice()...)
b.Recycle(false)
}
return source, chunk