mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
remove the slice pool management
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@ -1,8 +1,6 @@
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package obiseq
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import (
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"sync"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
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log "github.com/sirupsen/logrus"
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"golang.org/x/exp/slices"
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@ -14,13 +12,6 @@ import (
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// a memory pool of BioSequenceSlice is managed to limit allocations.
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type BioSequenceSlice []*BioSequence
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var _BioSequenceSlicePool = sync.Pool{
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New: func() interface{} {
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bs := make(BioSequenceSlice, 0, 10)
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return &bs
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},
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}
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// NewBioSequenceSlice returns a new BioSequenceSlice with the specified size.
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//
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// The size parameter is optional. If provided, the returned slice will be
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@ -28,13 +19,14 @@ var _BioSequenceSlicePool = sync.Pool{
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//
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// Returns a pointer to the newly created BioSequenceSlice.
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func NewBioSequenceSlice(size ...int) *BioSequenceSlice {
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slice := _BioSequenceSlicePool.Get().(*BioSequenceSlice)
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capacity := 0
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if len(size) > 0 {
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s := size[0]
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slice = slice.EnsureCapacity(s)
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(*slice) = (*slice)[0:s]
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capacity = size[0]
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}
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return slice
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slice := make(BioSequenceSlice, capacity)
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return &slice
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}
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// MakeBioSequenceSlice creates a new BioSequenceSlice with the specified size(s).
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@ -48,34 +40,6 @@ func MakeBioSequenceSlice(size ...int) BioSequenceSlice {
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return *NewBioSequenceSlice(size...)
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}
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// Recycle cleans up the BioSequenceSlice by recycling its elements and resetting its length.
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//
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// If including_seq is true, each element of the BioSequenceSlice is recycled using the Recycle method,
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// and then set to nil. If including_seq is false, each element is simply set to nil.
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//
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// The function does not return anything.
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func (s *BioSequenceSlice) Recycle(including_seq bool) {
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if s == nil {
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log.Panicln("Trying too recycle a nil pointer")
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}
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// Code added to potentially limit memory leaks
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if including_seq {
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for i := range *s {
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(*s)[i].Recycle()
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(*s)[i] = nil
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}
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} else {
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for i := range *s {
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(*s)[i] = nil
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}
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}
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*s = (*s)[:0]
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_BioSequenceSlicePool.Put(s)
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}
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// EnsureCapacity ensures that the BioSequenceSlice has a minimum capacity
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//
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// It takes an integer `capacity` as a parameter, which represents the desired minimum capacity of the BioSequenceSlice.
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