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Rename the Length methods Len to follow GO standart

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This commit is contained in:
Eric Coissac
2022-11-17 11:09:58 +01:00
parent eb32089305
commit 29563aa94e
30 changed files with 134 additions and 130 deletions
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12
pkg/obialign/alignment.go
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@ -73,10 +73,10 @@ func _BuildAlignment(seqA, seqB []byte, path []int, gap byte, bufferA, bufferB *
func BuildAlignment(seqA, seqB *obiseq.BioSequence,
path []int, gap byte) (*obiseq.BioSequence, *obiseq.BioSequence) {
bufferSA := obiseq.GetSlice(seqA.Length())
bufferSA := obiseq.GetSlice(seqA.Len())
defer obiseq.RecycleSlice(&bufferSA)
bufferSB := obiseq.GetSlice(seqB.Length())
bufferSB := obiseq.GetSlice(seqB.Len())
defer obiseq.RecycleSlice(&bufferSB)
_BuildAlignment(seqA.Sequence(), seqB.Sequence(), path, gap,
@ -117,12 +117,12 @@ func BuildAlignment(seqA, seqB *obiseq.BioSequence,
// return.
func BuildQualityConsensus(seqA, seqB *obiseq.BioSequence, path []int, statOnMismatch bool) (*obiseq.BioSequence, int) {
bufferSA := obiseq.GetSlice(seqA.Length())
bufferSB := obiseq.GetSlice(seqB.Length())
bufferSA := obiseq.GetSlice(seqA.Len())
bufferSB := obiseq.GetSlice(seqB.Len())
defer obiseq.RecycleSlice(&bufferSB)
bufferQA := obiseq.GetSlice(seqA.Length())
bufferQB := obiseq.GetSlice(seqB.Length())
bufferQA := obiseq.GetSlice(seqA.Len())
bufferQB := obiseq.GetSlice(seqB.Len())
defer obiseq.RecycleSlice(&bufferQB)
_BuildAlignment(seqA.Sequence(), seqB.Sequence(), path, ' ',