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Rename the Length methods Len to follow GO standart

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This commit is contained in:
Eric Coissac
2022-11-17 11:09:58 +01:00
parent eb32089305
commit 29563aa94e
30 changed files with 134 additions and 130 deletions
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5
pkg/obikmer/encodefourmer.go
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@ -31,7 +31,7 @@ var __single_base_code__ = []byte{0,
// the slice is used to store the result, overwise a new slice is
// created.
func Encode4mer(seq *obiseq.BioSequence, buffer *[]byte) []byte {
slength := seq.Length()
slength := seq.Len()
length := slength - 3
rawseq := seq.Sequence()
@ -101,7 +101,7 @@ func FastShiftFourMer(index [][]int, seq *obiseq.BioSequence, buffer *[]byte) (i
iternal_buffer := Encode4mer(seq, buffer)
shifts := make(map[int]int, 3*seq.Length())
shifts := make(map[int]int, 3*seq.Len())
for pos, code := range iternal_buffer {
for _, refpos := range index[code] {
@ -127,4 +127,3 @@ func FastShiftFourMer(index [][]int, seq *obiseq.BioSequence, buffer *[]byte) (i
return maxshift, maxcount
}