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Rename the Length methods Len to follow GO standart

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This commit is contained in:
Eric Coissac
2022-11-17 11:09:58 +01:00
parent eb32089305
commit 29563aa94e
30 changed files with 134 additions and 130 deletions
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6
pkg/obiseq/revcomp.go
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@ -13,7 +13,7 @@ func (sequence *BioSequence) ReverseComplement(inplace bool) *BioSequence {
s := sequence.sequence
for i, j := sequence.Length()-1, 0; i >= j; i-- {
for i, j := sequence.Len()-1, 0; i >= j; i-- {
// ASCII code & 31 -> builds an index in witch (a|A) is 1
// ASCII code & 0x20 -> Foce lower case
@ -25,7 +25,7 @@ func (sequence *BioSequence) ReverseComplement(inplace bool) *BioSequence {
if sequence.HasQualities() {
s := sequence.qualities
for i, j := sequence.Length()-1, 0; i >= j; i-- {
for i, j := sequence.Len()-1, 0; i >= j; i-- {
s[j], s[i] = s[i], s[j]
j++
}
@ -49,7 +49,7 @@ func (sequence *BioSequence) _revcmpMutation() *BioSequence {
return string(b)
}
lseq := sequence.Length()
lseq := sequence.Len()
mut, ok := sequence.GetIntMap("pairing_mismatches")
if ok && len(mut) > 0 {