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Rename the Length methods Len to follow GO standart

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This commit is contained in:
Eric Coissac
2022-11-17 11:09:58 +01:00
parent eb32089305
commit 29563aa94e
30 changed files with 134 additions and 130 deletions
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8
pkg/obiseq/subseq.go
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@ -13,11 +13,11 @@ func (sequence *BioSequence) Subsequence(from, to int, circular bool) (*BioSeque
return nil, errors.New("from greater than to")
}
if from < 0 || from >= sequence.Length() {
if from < 0 || from >= sequence.Len() {
return nil, errors.New("from out of bounds")
}
if to <= 0 || to > sequence.Length() {
if to <= 0 || to > sequence.Len() {
return nil, errors.New("to out of bounds")
}
@ -34,7 +34,7 @@ func (sequence *BioSequence) Subsequence(from, to int, circular bool) (*BioSeque
newSeq.id = fmt.Sprintf("%s_sub[%d..%d]", sequence.Id(), from+1, to)
newSeq.definition = sequence.definition
} else {
newSeq, _ = sequence.Subsequence(from, sequence.Length(), false)
newSeq, _ = sequence.Subsequence(from, sequence.Len(), false)
newSeq.Write(sequence.Sequence()[0:to])
if sequence.HasQualities() {
@ -52,7 +52,7 @@ func (sequence *BioSequence) Subsequence(from, to int, circular bool) (*BioSeque
func (sequence *BioSequence) _subseqMutation(shift int) *BioSequence {
lseq := sequence.Length()
lseq := sequence.Len()
mut, ok := sequence.GetIntMap("pairing_mismatches")
if ok && len(mut) > 0 {