obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

Correct the number of workers

Browse Source 
Former-commit-id: febbccfb853263e0761ecfccb0f09c8c1bf88475
This commit is contained in:
Eric Coissac
2023-11-22 09:46:30 +01:00
parent 8905a16bc0
commit 2e0c1bd801
11 changed files with 206 additions and 39 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
pkg/obiiter/batchiterator.go
View File

@ -10,6 +10,7 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
"github.com/tevino/abool/v2"
@ -566,7 +567,7 @@ func (iterator IBioSequence) DivideOn(predicate obiseq.SequencePredicate,
// A function that takes a predicate and a batch of sequences and returns a filtered batch of sequences.
func (iterator IBioSequence) FilterOn(predicate obiseq.SequencePredicate,
size int, sizes ...int) IBioSequence {
nworkers := 4
nworkers := obioptions.CLIReadParallelWorkers()
if len(sizes) > 0 {
nworkers = sizes[0]
@ -618,7 +619,7 @@ func (iterator IBioSequence) FilterOn(predicate obiseq.SequencePredicate,
func (iterator IBioSequence) FilterAnd(predicate obiseq.SequencePredicate,
size int, sizes ...int) IBioSequence {
nworkers := 4
nworkers := obioptions.CLIReadParallelWorkers()
if len(sizes) > 0 {
nworkers = sizes[0]