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Big change iin the data model, and a first version of obiuniq

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This commit is contained in:
Eric Coissac
2022-02-21 19:00:23 +01:00
parent 9737f97084
commit 2e7c1834b0
43 changed files with 664 additions and 440 deletions
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9
pkg/obichunk/chunk_on_disk.go
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@ -58,7 +58,7 @@ func ISequenceChunkOnDisk(iterator obiseq.IBioSequenceBatch,
}()
newIter.Wait()
close(newIter.Channel())
newIter.Close()
}()
obiformats.WriterDispatcher(dir+"/chunk_%s.fastx",
@ -78,14 +78,15 @@ func ISequenceChunkOnDisk(iterator obiseq.IBioSequenceBatch,
panic(err)
}
chunck := make(obiseq.BioSequenceSlice, 0, 10000)
//chunck := make(obiseq.BioSequenceSlice, 0, 10000)
chunck := obiseq.MakeBioSequenceSlice()
for iseq.Next() {
b := iseq.Get()
chunck = append(chunck, b.Slice()...)
b.Recycle()
}
newIter.Channel() <- obiseq.MakeBioSequenceBatch(order, chunck...)
newIter.Push(obiseq.MakeBioSequenceBatch(order, chunck))
}