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Big change iin the data model, and a first version of obiuniq

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This commit is contained in:
Eric Coissac
2022-02-21 19:00:23 +01:00
parent 9737f97084
commit 2e7c1834b0
43 changed files with 664 additions and 440 deletions
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6
pkg/obiformats/options.go
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@ -6,7 +6,7 @@ import (
type __options__ struct {
fastseq_header_parser obiseq.SeqAnnotator
fastseq_header_writer func(obiseq.BioSequence) string
fastseq_header_writer func(*obiseq.BioSequence) string
with_progress_bar bool
buffer_size int
batch_size int
@ -62,7 +62,7 @@ func (opt Options) ParseFastSeqHeader() obiseq.SeqAnnotator {
return opt.pointer.fastseq_header_parser
}
func (opt Options) FormatFastSeqHeader() func(obiseq.BioSequence) string {
func (opt Options) FormatFastSeqHeader() func(*obiseq.BioSequence) string {
return opt.pointer.fastseq_header_writer
}
@ -141,7 +141,7 @@ func OptionsFastSeqDefaultHeaderParser() WithOption {
// OptionsFastSeqHeaderFormat allows foor specifying the format
// used to write FASTA and FASTQ sequence.
func OptionsFastSeqHeaderFormat(format func(obiseq.BioSequence) string) WithOption {
func OptionsFastSeqHeaderFormat(format func(*obiseq.BioSequence) string) WithOption {
f := WithOption(func(opt Options) {
opt.pointer.fastseq_header_writer = format
})