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Big change iin the data model, and a first version of obiuniq

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This commit is contained in:
Eric Coissac
2022-02-21 19:00:23 +01:00
parent 9737f97084
commit 2e7c1834b0
43 changed files with 664 additions and 440 deletions
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6
pkg/obikmer/encodefourmer.go
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@ -30,7 +30,7 @@ var __single_base_code__ = []byte{0,
// in hexadecimal and 27 in decimal. If the buffer parameter is not nil
// the slice is used to store the result, overwise a new slice is
// created.
func Encode4mer(seq obiseq.BioSequence, buffer *[]byte) []byte {
func Encode4mer(seq *obiseq.BioSequence, buffer *[]byte) []byte {
slength := seq.Length()
length := slength - 3
rawseq := seq.Sequence()
@ -65,7 +65,7 @@ func Encode4mer(seq obiseq.BioSequence, buffer *[]byte) []byte {
return *buffer
}
func Index4mer(seq obiseq.BioSequence, index *[][]int, buffer *[]byte) [][]int {
func Index4mer(seq *obiseq.BioSequence, index *[][]int, buffer *[]byte) [][]int {
iternal_buffer := Encode4mer(seq, buffer)
@ -85,7 +85,7 @@ func Index4mer(seq obiseq.BioSequence, index *[][]int, buffer *[]byte) [][]int {
return *index
}
func FastShiftFourMer(index [][]int, seq obiseq.BioSequence, buffer *[]byte) (int, int) {
func FastShiftFourMer(index [][]int, seq *obiseq.BioSequence, buffer *[]byte) (int, int) {
iternal_buffer := Encode4mer(seq, buffer)