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Adds the ability to read gzip-tar file for the taxonomy dump

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This commit is contained in:
Eric Coissac
2025-01-24 11:47:59 +01:00
parent ffd67252c3
commit 3137c1f841
17 changed files with 305 additions and 64 deletions
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4
pkg/obiformats/genbank_read.go
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@ -266,9 +266,9 @@ func ReadGenbankFromFile(filename string, options ...WithOption) (obiiter.IBioSe
options = append(options, OptionsSource(obiutils.RemoveAllExt((path.Base(filename)))))
reader, err = Ropen(filename)
reader, err = obiutils.Ropen(filename)
if err == ErrNoContent {
if err == obiutils.ErrNoContent {
log.Infof("file %s is empty", filename)
return ReadEmptyFile(options...)
}