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Patch a bug on writing to stdout, and add clearer error on openning data files

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This commit is contained in:
Eric Coissac
2024-08-13 09:45:28 +02:00
parent bdb96dda94
commit 31bfc88eb9
43 changed files with 1654 additions and 696 deletions
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13
pkg/obiformats/seqfile_chunk_write.go
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@ -21,11 +21,21 @@ func WriteSeqFileChunk(
toBePrinted := make(map[int]SeqFileChunk)
for chunk := range chunk_channel {
if chunk.Order == nextToPrint {
_, _ = writer.Write(chunk.Raw.Bytes())
log.Debugf("Writing chunk: %d of length %d bytes",
chunk.Order,
len(chunk.Raw.Bytes()))
n, err := writer.Write(chunk.Raw.Bytes())
if err != nil {
log.Fatalf("Cannot write chunk %d only %d bytes written on %d sended : %v",
chunk.Order, n, len(chunk.Raw.Bytes()), err)
}
nextToPrint++
chunk, ok := toBePrinted[nextToPrint]
for ok {
log.Debug("Writing buffered chunk : ", chunk.Order)
_, _ = writer.Write(chunk.Raw.Bytes())
delete(toBePrinted, nextToPrint)
nextToPrint++
@ -36,6 +46,7 @@ func WriteSeqFileChunk(
}
}
log.Debugf("FIle have to be closed : %v", toBeClosed)
if toBeClosed {
err := writer.Close()
if err != nil {