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Patch a bug on writing to stdout, and add clearer error on openning data files

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This commit is contained in:
Eric Coissac
2024-08-13 09:45:28 +02:00
parent bdb96dda94
commit 31bfc88eb9
43 changed files with 1654 additions and 696 deletions
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14
pkg/obitools/obiconvert/sequence_reader.go
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@ -188,3 +188,17 @@ func CLIReadBioSequences(filenames ...string) (obiiter.IBioSequence, error) {
return iterator, nil
}
func OpenSequenceDataErrorMessage(args []string, err error) {
if err != nil {
switch len(args) {
case 0:
log.Errorf("Cannot open stdin (%v)", err)
case 1:
log.Errorf("Cannot open file %s: %v", args[0], err)
default:
log.Errorf("Cannot open one of the data files: %v", err)
}
os.Exit(1)
}
}