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second version of obidistribute and a first buggy version of obiuniq

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This commit is contained in:
Eric Coissac
2022-02-15 00:47:02 +01:00
parent b931321ba1
commit 3586ecc483
15 changed files with 402 additions and 21 deletions
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36
cmd/obitools/obiuniq/main.go Normal file
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package main
import (
"os"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiuniq"
)
func main() {
// go tool pprof -http=":8000" ./obipairing ./cpu.pprof
// f, err := os.Create("cpu.pprof")
// if err != nil {
// log.Fatal(err)
// }
// pprof.StartCPUProfile(f)
// defer pprof.StopCPUProfile()
// go tool trace cpu.trace
// ftrace, err := os.Create("cpu.trace")
// if err != nil {
// log.Fatal(err)
// }
// trace.Start(ftrace)
// defer trace.Stop()
optionParser := obioptions.GenerateOptionParser(obiuniq.OptionSet)
_, args, _ := optionParser(os.Args)
sequences, _ := obiconvert.ReadBioSequencesBatch(args...)
unique := obiuniq.Unique(sequences)
obiconvert.WriteBioSequencesBatch(unique, true)
}