obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

patch a low level bug in EnsureCapacity

Browse Source 
Former-commit-id: 2d50dc6923e7cfca9b864fb885577c1d1f936fc1
This commit is contained in:
Eric Coissac
2024-01-16 20:51:45 +01:00
parent 6fca03227a
commit 3c48bafab0
2 changed files with 13 additions and 3 deletions
Download Patch File Download Diff File Expand all files Collapse all files

15
pkg/obiseq/biosequenceslice.go
View File

@ -88,8 +88,19 @@ func (s *BioSequenceSlice) EnsureCapacity(capacity int) *BioSequenceSlice {
c = 0 c = 0
} }
if capacity > c { n := 0
*s = slices.Grow[BioSequenceSlice](*s, capacity-c) for capacity > c {
old_c := c
*s = slices.Grow(*s, capacity)
c = cap(*s)
if c < capacity {
n++
if n < 4 {
log.Warnf("cannot allocate a Biosequence Slice of size %d (only %d from %d)", capacity, c, old_c)
} else {
log.Panicf("cannot allocate a Biosequence Slice of size %d (only %d from %d)", capacity, c, old_c)
}
}
} }
return s return s

1
pkg/obitools/obitag/obigeomtag.go
View File

@ -138,7 +138,6 @@ func FindGeomClosest(sequence *obiseq.BioSequence,
} }
matches := obiseq.MakeBioSequenceSlice(len(min_idx)) matches := obiseq.MakeBioSequenceSlice(len(min_idx))
matches = matches[0:len(min_idx)]
for i, j := range min_idx { for i, j := range min_idx {
matches[i] = (*references)[j] matches[i] = (*references)[j]
} }