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Replace MakeBioSequence call by NewBioSequence call,

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Implements a new file format guesser
Adds some more API doc


Former-commit-id: 9837bf1c28beca6ddb599b367f93548950ba83c1
This commit is contained in:
Eric Coissac
2023-08-30 19:59:46 +02:00
parent c2533667b2
commit 3f8c0d6a2f
7 changed files with 582 additions and 116 deletions
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10
pkg/obikmer/debruijn.go
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@ -226,13 +226,13 @@ func (g *DeBruijnGraph) LongestConsensus(id string) (*obiseq.BioSequence, error)
s := g.DecodePath(path)
if len(s) > 0 {
seq := obiseq.MakeBioSequence(
seq := obiseq.NewBioSequence(
id,
[]byte(s),
"",
)
return &seq, nil
return seq, nil
}
return nil, fmt.Errorf("cannot identify optimum path")
@ -295,13 +295,13 @@ func (g *DeBruijnGraph) BestConsensus(id string) (*obiseq.BioSequence, error) {
s := g.DecodePath(path)
if len(s) > 0 {
seq := obiseq.MakeBioSequence(
seq := obiseq.NewBioSequence(
id,
[]byte(s),
"",
)
return &seq, nil
return seq, nil
}
return nil, fmt.Errorf("cannot identify optimum path")
@ -366,7 +366,7 @@ func (graph *DeBruijnGraph) Push(sequence *obiseq.BioSequence) {
for _, idx := range init {
graph.append(s[graph.kmersize:], idx)
}
}
}
}