obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

reduce the memory impact of obiuniq.

Browse Source
This commit is contained in:
Eric Coissac
2024-11-27 13:30:16 +01:00
parent d29a56dcbf
commit 40fb4e9767
9 changed files with 145 additions and 8 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
pkg/obitools/obiconvert/sequence_reader.go
View File

@ -99,6 +99,8 @@ func CLIReadBioSequences(filenames ...string) (obiiter.IBioSequence, error) {
opts = append(opts, obiformats.OptionsFastSeqHeaderParser(obiformats.ParseGuessedFastSeqHeader))
}
opts = append(opts, obiformats.OptionsReadQualities(obioptions.CLIReadQualities()))
nworkers := obioptions.CLIReadParallelWorkers()
if nworkers < 2 {
nworkers = 2