obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

Stabilize the obipairing output. whant run twice on the same dataset results are identical

Browse Source
This commit is contained in:
Eric Coissac
2023-02-05 11:06:31 +01:00
parent a6af0abdd8
commit 4117cbdd08
3 changed files with 33 additions and 22 deletions
Download Patch File Download Diff File Expand all files Collapse all files

7
pkg/obialign/pairedendalign.go
View File

@ -322,9 +322,13 @@ func PEAlign(seqA, seqB *obiseq.BioSequence,
}
extra5 = -startA
startB = 0
rawSeqA = seqA.Sequence()[startA:]
qualSeqA = seqA.Qualities()[startA:]
partLen = len(rawSeqA)
if partLen > seqB.Len() {
partLen = seqB.Len()
}
rawSeqB = seqB.Sequence()[0:partLen]
qualSeqB = seqB.Qualities()[0:partLen]
extra3 = seqB.Len() - partLen
@ -343,6 +347,9 @@ func PEAlign(seqA, seqB *obiseq.BioSequence,
rawSeqB = seqB.Sequence()[startB:]
qualSeqB = seqB.Qualities()[startB:]
partLen = len(rawSeqB)
if partLen > seqA.Len() {
partLen = seqA.Len()
}
rawSeqA = seqA.Sequence()[:partLen]
qualSeqA = seqA.Qualities()[:partLen]
extra3 = partLen - seqA.Len()