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Changes to be committed:

Browse Source 
modified:   pkg/obiformats/universal_read.go
	modified:   pkg/obioptions/version.go
	modified:   pkg/obiseq/taxonomy_methods.go
This commit is contained in:
Eric Coissac
2025-02-12 08:40:38 +01:00
parent 6a8061cc4f
commit 4774438644
3 changed files with 6 additions and 7 deletions
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9
pkg/obiseq/taxonomy_methods.go
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@ -41,13 +41,12 @@ func (s *BioSequence) SetTaxid(taxid string, rank ...string) {
taxon, isAlias, err = taxonomy.Taxon(taxid)
if err != nil {
logger := log.Warnf
if obidefault.FailOnTaxonomy() {
log.Fatalf("%s: Taxid: %v is unknown from taxonomy (%v)",
s.Id(), taxid, err)
} else {
log.Warnf("%s: Taxid: %v is unknown from taxonomy (%v)",
s.Id(), taxid, err)
logger = log.Fatalf
}
logger("%s: Taxid: %v is unknown from taxonomy (%v)",
s.Id(), taxid, err)
}
if isAlias {