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Fisrt versin of the two levels indexing

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Former-commit-id: 4d86483bc120e27cb6f5d2c216596d410274fc69
This commit is contained in:
Eric Coissac
2024-07-12 15:17:48 +02:00
parent 42c5881ddc
commit 4e4fac491f
9 changed files with 319 additions and 19 deletions
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32
cmd/obitools/obireffamidx/main.go Normal file
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package main
import (
"os"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obirefidx"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
)
func main() {
optionParser := obioptions.GenerateOptionParser(obirefidx.OptionSet)
_, args := optionParser(os.Args)
fs, err := obiconvert.CLIReadBioSequences(args...)
if err != nil {
log.Errorf("Cannot open file (%v)", err)
os.Exit(1)
}
indexed := obirefidx.IndexFamilyDB(fs)
obiconvert.CLIWriteBioSequences(indexed, true)
obiiter.WaitForLastPipe()
}