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Fisrt versin of the two levels indexing

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Former-commit-id: 4d86483bc120e27cb6f5d2c216596d410274fc69
This commit is contained in:
Eric Coissac
2024-07-12 15:17:48 +02:00
parent 42c5881ddc
commit 4e4fac491f
9 changed files with 319 additions and 19 deletions
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22
pkg/obiiter/speed.go
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@ -8,7 +8,7 @@ import (
"github.com/schollz/progressbar/v3"
)
func (iterator IBioSequence) Speed(message ...string) IBioSequence {
func (iterator IBioSequence) Speed(message string, size ...int) IBioSequence {
// If the STDERR is redicted and doesn't end up to a terminal
// No progress bar is printed.
@ -31,19 +31,15 @@ func (iterator IBioSequence) Speed(message ...string) IBioSequence {
progressbar.OptionSetWidth(15),
progressbar.OptionShowCount(),
progressbar.OptionShowIts(),
progressbar.OptionSetDescription(message),
)
if len(message) > 0 {
pbopt = append(pbopt,
progressbar.OptionSetDescription(message[0]),
)
} else {
pbopt = append(pbopt,
progressbar.OptionSetDescription("[Sequence Processing]"),
)
n := -1
if len(size) > 0 {
n = size[0]
}
bar := progressbar.NewOptions(-1, pbopt...)
bar := progressbar.NewOptions(n, pbopt...)
go func() {
c := 0
@ -68,13 +64,13 @@ func (iterator IBioSequence) Speed(message ...string) IBioSequence {
if iterator.IsPaired() {
newIter.MarkAsPaired()
}
return newIter
}
func SpeedPipe(message ...string) Pipeable {
func SpeedPipe(message string) Pipeable {
f := func(iterator IBioSequence) IBioSequence {
return iterator.Speed(message...)
return iterator.Speed(message)
}
return f