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some cleaning

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This commit is contained in:
Eric Coissac
2025-02-24 11:31:49 +01:00
parent 8671285d02
commit 51b3e83d32
7 changed files with 64 additions and 97 deletions
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2
pkg/obiseq/taxonomy_classifier.go
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@ -31,7 +31,7 @@ func TaxonomyClassifier(taxonomicRank string,
if taxon != nil {
ttaxon := taxon.TaxonAtRank(taxonomicRank)
if abortOnMissing && ttaxon == nil {
log.Fatalf("Taxon at rank %s not found in taxonomy for taxid %d", taxonomicRank, taxon.String())
log.Fatalf("Taxon at rank %s not found in taxonomy for taxid %s", taxonomicRank, taxon.String())
}
} else {
if abortOnMissing {

2
pkg/obiseq/taxonomy_predicate.go
View File

@ -25,7 +25,7 @@ func IsAValidTaxon(taxonomy *obitax.Taxonomy, withAutoCorrection ...bool) Sequen
if autocorrection {
sequence.SetTaxid(ttaxid)
log.Printf(
"Sequence %s : Taxid %d updated with %d",
"Sequence %s : Taxid %s updated with %s",
sequence.Id(),
taxid,
ttaxid,