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Patch a bug in fasta and fastq reading

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Former-commit-id: bcaa264b4c4a7c67617eb909b199176bf09913db
This commit is contained in:
Eric Coissac
2024-06-21 14:28:57 +02:00
parent 818ce87bab
commit 54a138196c
9 changed files with 85 additions and 44 deletions
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4
pkg/obiiter/merge.go
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@ -2,7 +2,7 @@ package obiiter
import "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
func (iterator IBioSequence) IMergeSequenceBatch(na string, statsOn []string, sizes ...int) IBioSequence {
func (iterator IBioSequence) IMergeSequenceBatch(na string, statsOn obiseq.StatsOnDescriptions, sizes ...int) IBioSequence {
batchsize := 100
if len(sizes) > 0 {
@ -36,7 +36,7 @@ func (iterator IBioSequence) IMergeSequenceBatch(na string, statsOn []string, si
return newIter
}
func MergePipe(na string, statsOn []string, sizes ...int) Pipeable {
func MergePipe(na string, statsOn obiseq.StatsOnDescriptions, sizes ...int) Pipeable {
f := func(iterator IBioSequence) IBioSequence {
return iterator.IMergeSequenceBatch(na, statsOn, sizes...)
}