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Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

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Eric Coissac
2025-03-25 16:44:46 +01:00
parent 2ab6f67d58
commit 5a3705b6bb
52 changed files with 151 additions and 90 deletions
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4
pkg/obialign/readalign.go
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@ -53,10 +53,10 @@ func ReadAlign(seqA, seqB *obiseq.BioSequence,
over = min(seqA.Len(), seqB.Len())
}
// log.Warnf("fw/fw: %v shift=%d fastCount=%d/over=%d fastScore=%f",
// obilog.Warnf("fw/fw: %v shift=%d fastCount=%d/over=%d fastScore=%f",
// directAlignment, shift, fastCount, over, fastScore)
// log.Warnf(("seqA: %s\nseqB: %s\n"), seqA.String(), seqB.String())
// obilog.Warnf(("seqA: %s\nseqB: %s\n"), seqA.String(), seqB.String())
// At least one mismatch exists in the overlaping region
if fastCount+3 < over {