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Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

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Eric Coissac
2025-03-25 16:44:46 +01:00
parent 2ab6f67d58
commit 5a3705b6bb
52 changed files with 151 additions and 90 deletions
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6
pkg/obiiter/limitmemory.go
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@ -3,8 +3,8 @@ package obiiter
import (
"runtime"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obilog"
"github.com/pbnjay/memory"
log "github.com/sirupsen/logrus"
)
func (iterator IBioSequence) LimitMemory(fraction float64) IBioSequence {
@ -25,11 +25,11 @@ func (iterator IBioSequence) LimitMemory(fraction float64) IBioSequence {
runtime.Gosched()
nwait++
if nwait%1000 == 0 {
log.Warnf("Wait for memory limit %f/%f", fracLoad(), fraction)
obilog.Warnf("Wait for memory limit %f/%f", fracLoad(), fraction)
}
if nwait > 10000 {
log.Warnf("Very long wait for memory limit %f/%f", fracLoad(), fraction)
obilog.Warnf("Very long wait for memory limit %f/%f", fracLoad(), fraction)
break
}
}