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Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

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Eric Coissac
2025-03-25 16:44:46 +01:00
parent 2ab6f67d58
commit 5a3705b6bb
52 changed files with 151 additions and 90 deletions
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6
pkg/obikmer/kmermap.go
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@ -6,9 +6,9 @@ import (
"unsafe"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obifp"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obilog"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"github.com/schollz/progressbar/v3"
log "github.com/sirupsen/logrus"
)
type KmerMap[T obifp.FPUint[T]] struct {
@ -226,12 +226,12 @@ func NewKmerMap[T obifp.FPUint[T]](
sparseAt := -1
if sparse && kmersize%2 == 0 {
log.Warnf("Kmer size must be odd when using sparse mode")
obilog.Warnf("Kmer size must be odd when using sparse mode")
kmersize++
}
if !sparse && kmersize%2 == 1 {
log.Warnf("Kmer size must be even when not using sparse mode")
obilog.Warnf("Kmer size must be even when not using sparse mode")
kmersize--
}