obitools/obitools4
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Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

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Eric Coissac
2025-03-25 16:44:46 +01:00
parent 2ab6f67d58
commit 5a3705b6bb
52 changed files with 151 additions and 90 deletions
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3
pkg/obilua/lua.go
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@ -8,6 +8,7 @@ import (
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obilog"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
log "github.com/sirupsen/logrus"
lua "github.com/yuin/gopher-lua"
@ -230,7 +231,7 @@ func LuaProcessor(iterator obiiter.IBioSequence, name, program string, breakOnEr
if breakOnError {
log.Fatalf("Error during Lua sequence processing : %v", err)
} else {
log.Warnf("Error during Lua sequence processing : %v", err)
obilog.Warnf("Error during Lua sequence processing : %v", err)
}
}