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Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

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Eric Coissac
2025-03-25 16:44:46 +01:00
parent 2ab6f67d58
commit 5a3705b6bb
52 changed files with 151 additions and 90 deletions
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3
pkg/obiseq/biosequenceslice.go
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@ -1,6 +1,7 @@
package obiseq
import (
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obilog"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitax"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
log "github.com/sirupsen/logrus"
@ -61,7 +62,7 @@ func (s *BioSequenceSlice) EnsureCapacity(capacity int) *BioSequenceSlice {
if c < capacity {
n++
if n < 4 {
log.Warnf("cannot allocate a Biosequence Slice of size %d (only %d from %d)", capacity, c, old_c)
obilog.Warnf("cannot allocate a Biosequence Slice of size %d (only %d from %d)", capacity, c, old_c)
} else {
log.Panicf("cannot allocate a Biosequence Slice of size %d (only %d from %d)", capacity, c, old_c)
}