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Refactor sequence file reading

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Former-commit-id: 3dcb96e68da648d72bb585da047e3496427d7851
This commit is contained in:
Eric Coissac
2024-05-01 00:50:23 +02:00
parent 33d4d63acd
commit 5b98393a68
7 changed files with 491 additions and 555 deletions
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3
pkg/obiiter/workers.go
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@ -1,8 +1,6 @@
package obiiter
import (
"runtime"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
@ -82,7 +80,6 @@ func (iterator IBioSequence) MakeISliceWorker(worker obiseq.SeqSliceWorker, brea
log.Fatalf("Error on sequence processing : %v", err)
}
newIter.Push(batch)
runtime.GC()
}
newIter.Done()
}